Scaffold Ga0181359_1025826

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1025826
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2250
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014016	Metagenome / Metatranscriptome	266	N
F014613	Metagenome / Metatranscriptome	261	Y
F031093	Metagenome / Metatranscriptome	183	N
F074582	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10258261	F074582	N/A	MKAIREAGQVSDTQKSLSEWLEEAGATLFDRGIEYGDPRHNFLRIYKIARALG
Ga0181359_10258262	F014613	GAG	MLPNLSDEAVVGIIIGVPFIGLYIWSLFTSAKAKAFNEGYKRGRSSVRYTEVLK
Ga0181359_10258263	F014016	GGA	MINKVALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVSADVA
Ga0181359_10258266	F031093	N/A	MPAAELATLVASVLGSIALLIAGLRYIIKLENIPIVSRLDKMESQLELALAKGVRNGNAKARK