Scaffold Ga0181359_1023207

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1023207
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2362
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F023592	Metagenome / Metatranscriptome	209	Y
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10232073	F030767	GAG	MAYKTKCRLCGKVTEHIERVVTENLPPYVKTLQCVKCGVMGVVMLEDVNDA
Ga0181359_10232074	F029049	GAGG	VAVCQVPSVAKVILDRSQEITSHRVGLERTIIRNADPTDASNYGQSYKNWHELVWQESESCGAEIAVASYFGDYSFTPAIDNAHDTADVGDNIEVKWTKHANGHLILQNRGEGRPNDVAILVTGFSPCYMLLGWMPVHMAKQAKYKHPYQNNYWVPRSNLFEMQYLKRSNYGV
Ga0181359_10232076	F007029	AGGAG	MGFLDNYEDVNARIKRFRAEFPSGRLVAYIESFDIDKGTILVRAEAYREYEDNVPSAIDYAFGNVATYPQNMRKWMVEDTITSAYGRVIGLLTPSLEHSSRPTAQDMQKVDTLPADADPWSTKASIEDMATMATAVLDLSTQLGGELVAEAPRCPHGTMVWATGTAKATGKPWAAYKCTERIRANQCNPVWQVMTSSGWKPQV
Ga0181359_10232077	F023592	N/A	IGLNKGRNMNSLDILIGLGACGLGFLFMVLGYSVGFKHGHGEGFIRGRAIAQALKDKELI