NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1020962

Scaffold Ga0181359_1020962


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1020962 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2475
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015354Metagenome / Metatranscriptome255Y
F023295Metagenome / Metatranscriptome210Y
F035672Metagenome / Metatranscriptome171Y
F063343Metagenome129Y
F067530Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10209622F067530N/AMQILTLNLDPATANALITALEVARRQGDFAVARTAVSIISELIRQDEEFKKLTPPVQIQTAE
Ga0181359_10209623F035672N/AMLTDSIRDLSIGVGGPAGGLLLANIVPDPLLAHISITLGSLAALSVIIKNVLDIWSNRNK
Ga0181359_10209624F015354N/AMNPNLSSLIRHGLTAAGGFLVAKGLASTDQIVELAGAIVSIAGIVLSILKNKKAATPAPTPAA
Ga0181359_10209625F023295N/AMLHGVGCATRVILVPEGQPVQLAEPIRAKVYAFDSTGKLVPSSNKVVLPAGWYVLPRK
Ga0181359_10209626F063343N/AMNYLILLGILGLFALGQKTRPNWVSEIKSTLIKLMVPGADRRLFSEFRQATFSWIRNPASWVRVFDWTGYAAGINGLGGVGGGTLISRRHVLLANHVPYPNKPNGPFDIFFLNANSRTFTYKVTNIQQVGDTDIAIGTLDRDADPSLNVYRVLPDNWTQYIANKAESFNSMGVVGTNYAFVLPVLYSGQNRKVSTADVVNISLGLAGVNIPAFEVARAFGDPIIGGDSGNPIFAMLGNELVLLGAWYTGPYRGYTVGTFPWLLDQKSTIEKIMG
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