Scaffold Ga0181359_1020840

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1020840
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2481
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10208405	F044916	N/A	MGSKKVEKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKTSLEILYKENPNLFADHAKLKLNKK
Ga0181359_10208406	F064403	GGA	MINPRAKILSDLKRAYLKEHPISLVDRILGYLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF
Ga0181359_10208407	F036564	GGAG	MKLGRICVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLGNWIRVSEDKNATEDMIPEFLLDKEND
Ga0181359_10208408	F032548	N/A	MKHNQEMEKAIKILEELVTQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK