Scaffold Ga0181359_1020752

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1020752
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2487
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F037730	Metagenome	167	Y
F088868	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10207521	F088868	N/A	PVYKHGDCSWLPALALQAGWQVEHLEQLTQVALREAGCCPNRRGGDSVDKDCNIIGVSDKTHRSDTGALQINGVNFDLSRNPHAPICLQMGVCTQEPLLDPLTNLKAGKLLFDYWQKAAGNGWIPWDMCNRTRTCNDD
Ga0181359_10207522	F013413	GAG	MTENEYNETFDMQMEREHQQTLKRMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIISELETRIKDLESEARRLEMLLTRAN
Ga0181359_10207523	F014620	N/A	MFSPSIGLGGTFERPAINRDIVIIAREAKQTSVDAAIKAKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNQAIVWRCV
Ga0181359_10207525	F037730	GAGG	MTDFNEAQLTNQYLIDQLVIARKRNEVLEAHIATLMEDLKVSSQLLNACTAYLS