Scaffold Ga0181359_1019003

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1019003
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2586
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F017452	Metagenome	240	Y
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10190031	F039000	AGGA	MTKETDATDKDIEQVMDDAQTLLNFCGNTFAQPHQAWFACLVSSAVLTAELDVPLEKFLEGFEHAYSDAMKTKIKGASYDH
Ga0181359_101900310	F006110	AGGA	MPRPKPPEPLIGRQVRMSDRQWMIFNQLGGADWLRKLIEKKAPMPKKY
Ga0181359_10190032	F031377	AGGGGG	MIINADNYIPVNRTDKRLTPFNTGKVQIGLLYQPRPPELTGSEEVIQAMLLNKPSMYRQPSVWPVVLGSAIVAVLLMFLTR
Ga0181359_10190033	F028744	GAGG	MQNLHEFLYECDELGLRLRCLFEYEPEEIGSVEPISGMKLEPDYPEVWTLVSVFLPNSTVDLSGVLHPDVIFQVQMDAATYFEGTREGNSYD
Ga0181359_10190035	F045551	AGGAG	MTEQEELAILRPYVTECGKLVGQNYELEKAYKATDKLLLDVLMGDVDPMQAMINRQKIKDAFDGHV
Ga0181359_10190038	F017452	AGGAG	MIHTDEDDEFERIERENTMKGQPYHYDVYVSPSQRNVVLEEVAKAFDAMKNGGDTTAGFAIYVRGMKT