Scaffold Ga0181359_1018739

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1018739
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2600
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019469	Metagenome	229	Y
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F027439	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10187391	F027439	AGGAGG	MKSIYKYARLEVNALAEMLEKNACQPGQLLESNVSPLAWIMNQMLYDKFHGNGWKLNLLTGSFEKV
Ga0181359_10187394	F020665	AGGA	MRKKTRDIKLVKVEECKTAKIVVEVDDELFEAMAQAGRKHILKDKLACFSYAVNKALLELCEEVK
Ga0181359_10187395	F022371	AGGAG	MLCLLELKDIVWAISWFILYSWLILSIIYCAGFIILKLIDYIRKELDL
Ga0181359_10187396	F021063	GGTGG	VRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKNGTVGWWCRASGVRIDNRTLLRKLQENDYALPTGA
Ga0181359_10187397	F019469	N/A	PMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHTNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEARLVGLGR