NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1017276

Scaffold Ga0181359_1017276


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1017276 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2692
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F036564Metagenome / Metatranscriptome169N
F064403Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10172761F064403GGAMINPRAKILSDLKRSYLKEHPVTLVDRILGYLNNLTDFQLCQLYSEKCETNPKYIAEQFEFKF
Ga0181359_101727610F034827N/AMKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTLNDPDEQQGNRVYKLNAKINIVVL
Ga0181359_10172762F036564GGAGMKLGRICVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLTNWIRVSEDKNATEDMIPEFLLDKEND
Ga0181359_10172763F032548N/AMNYNKEMDKAIKILEELVTQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK
Ga0181359_10172764F027756GGAMKLKDLIDRKILFINFPINRYAIQEGKVSEISPAEKCIKINNDWHLINNIRIIELFSKDERPSLGFN
Ga0181359_10172768F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMEYDGKRTY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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