Scaffold Ga0181359_1016417

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1016417
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2750
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F039641	Metagenome / Metatranscriptome	163	N
F050378	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10164173	F039641	N/A	MIPAAYSNALKNAIQAYSYADRVAIWRTVNAADGIGGVSQHWIQVAEIRGTISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVKADDRIYTSGNPQNLAPYYEVIGSDYGHTDAVSQTIGLRARTNG
Ga0181359_10164174	F050378	GAG	MWVQIGIQAFITTVSIGAAWVALQVRLTRLETQVAHIINTLDGQQQEVRRIEQRLGKLENKVSALEAVINR
Ga0181359_10164175	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFSGVQANALKVGK
Ga0181359_10164176	F006623	AGGTGG	MNLQNYRLEPNPNSPGDWIVFGDIYDNEGNLLGTFGPDGTSIFGWWALQDAQFQQGYSNQFAVIMAQEIVAGTAE