Scaffold Ga0181359_1014717

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1014717
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2880
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F041644	Metagenome	159	Y
F052570	Metagenome / Metatranscriptome	142	N
F053128	Metagenome	141	N
F058947	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_101471711	F002827	AGGGGG	VNKEYYQAKADLCRDLAIKQMVEGEANEAGKNLIRMVNALNEINLINYKEEKDNER
Ga0181359_10147172	F058947	AGGAGG	VIACELQNLEDIMTKAGLLLTGEAYDKAQDYLQENCPCSTYNYLLGYKIGRGK
Ga0181359_10147175	F041644	AGGAGG	VSLEFILDRLTSVQVGGFWALIQVIIYALVIYLGLVIISKITDKREREGKR
Ga0181359_10147176	F053128	GAGG	MKGYFVIDKQQTGWKEGYLWKSIKEIADSIRDYDDYKELEVSNLTHSQVCDLWDFEYHRITPANCEKYGVRPSQLEQEVIFTYDTEGEGE
Ga0181359_10147178	F052570	AGGAGG	MSKMKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTSDVALLTYQGREYRVVCLGEMRILYKGEIIRYCDDLVRAGIKRDKDLSKIDDSGGEWINNSWFEVYDYGSNEYTGEVYHEVKDAIETVANWIVDKELANV