Scaffold Ga0181359_1014665

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1014665
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2883
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021263	Metagenome	219	Y
F060611	Metagenome	132	Y
F071972	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10146651	F071972	AGGAG	MKPIAWYDPTNGMVSTDKDSPLFTPLGQVLPLYTQRTWVGLTKEERHKISMANKPYVADIMAAHEEELKR
Ga0181359_10146655	F021263	GAGG	MTNEEREMDLALAELESEVRRLKKIEQAALAVVKSFSTSIDYNTWDEALDKLEAVLKEKP
Ga0181359_10146658	F060611	AGGAGG	MENDTTKRFPRTMHEAFNCDSEPISGPYGKQAVWPVFAIFFIVIVAGIILFWSKV