Scaffold Ga0181359_1014640

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1014640
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2885
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039943	Metagenome / Metatranscriptome	162	Y
F065418	Metagenome	127	N
F067397	Metagenome / Metatranscriptome	125	N
F070857	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10146403	F070857	AGAAG	MKVICIDADKKPKNVPIEEWVKEGEMYNVTRIVRMGLQKETYGFLLKEVQLSSRSFPYELYDATRFLPIELLSEINEEKEKEVNVEEAYLELI
Ga0181359_10146405	F065418	N/A	MEYTIDDILKECDNVVYEFQNSTKKRLRPMLDKRNYLIGMLYYKFGYTEEQIAAIFNMSRTTVSVSKLHTYSLLKYGDNTFKTNVNEYLINYPYDFPSFSAKFKKDIQIVMSFDTKTLKKIRAYRDVVNEKTTANAIKRLVNNGLQLWEK
Ga0181359_10146406	F067397	N/A	MGKMKDLYYELLHANNGEIPQEATIADLAKMNDLKIYEWREYERSQNHVKKPKNEGSIKRKQS
Ga0181359_10146407	F039943	N/A	MKEVSKGSSLNEHRQEKEYGWKPISSRKKPVKKSSEYTYAFIGVVIGLTMGILTSIFMYRDAKRCNSLLEENKLLKEMLYYRDVNPIKTP