Scaffold Ga0181359_1014163

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1014163
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2922
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F020138	Metagenome	225	Y
F021243	Metagenome	219	Y
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10141631	F012211	AGGAG	MATDEERFKYECWTVVQELDPDDISDAIQDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTPWVDDIEELQAYRNLRIERVQKALEERKIMEAKMDGPFQQMFDE
Ga0181359_10141632	F046258	GGAG	MKHLTIAIKRVLSYFEIVTLQPSLPILLRDKTPARMTLPTLSITDPKFVYKNASCTDITHTFQKAKDERLQRLQHDANLNRAKDQGTGEQVSKQKLRRVHG
Ga0181359_10141637	F020138	AGG	MNQQQTTRLNAFWQDVEAHKALNPSLPESVLVILKSVALDALLAAQDIEQIGVNDANN
Ga0181359_10141638	F011742	AGGAG	MQTIEFVPFDWVDDDFNPEIDRIKVDYQWHEADDSVGLLSYCEKTVKWMRFNLEIKDITDELSYADLAYLKDAIKRNDQEIADERT
Ga0181359_10141639	F021243	AGGAG	MKEPEDEAFEELALKQGQWSHTSGWRKKQIAHMDVYSHPAEFTHLHRNDVIEEVAQHIEKCTLAFGKDTIQS