Scaffold Ga0181359_1013407

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1013407
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2985
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005344	Metagenome	403	Y
F005503	Metagenome / Metatranscriptome	398	Y
F019997	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10134071	F005503	N/A	MSLYIWEHSTRLPREQKMTSSEIGLFVLMLIACILWAVVSYSIGFKEGQREGYRRGRSVSRHISAKAVTK
Ga0181359_10134073	F019997	AGGAG	MNELKSAGASWLRASIAAVAALYMSGITDPKILVNAFAAGLLGPAAKFLNPKDSSYGLGK
Ga0181359_10134077	F005344	N/A	ANQALGQGITIKTRAGDVRNDLTIKYNTNSTSEVSDTDPASIAEYGDLAQIITTTIKHQADAEDQAAFYLALRAYPQPIFDSITYALTNPELDNADRDALINIFMGQPIALNDLPSNMSSGVFQGFVEGFTFRASYNELAITLLMSPLAYSLQAMQWNDVPINEQWNTVSPTLEWQYATIVS