Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1011649 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1011649 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3165
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3165

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F012433	Metagenome / Metatranscriptome	280	N
F014487	Metagenome / Metatranscriptome	262	Y
F029043	Metagenome	189	Y
F079581	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10116492	F006138	GAG	MPAVTIGASAAGLVFGLTAEAGIGLVQSFSEVRNIEKNEVRNNSGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTAIGSGSLRIDSITLNKSNDAFVTLDISATGYPNVT
Ga0181359_10116493	F012433	N/A	VSADQVADLRERLARIEERQTNIIQILERHTSELAQWTGKINSKVDTLEKESSTIKTKLWLVALISGAVFSTIWELIKARFLGRHI
Ga0181359_10116494	F029043	N/A	MSKDEQACKALQYLLDEGFISLGYIDGQPSVFLTTSLADAHKAILGHAKDSADWWK
Ga0181359_10116495	F014487	N/A	MPLLLLALALCLCSCSPKGTDKESLTVRYSDMSAAEDAGKTPR
Ga0181359_10116497	F079581	N/A	MNQTPQFNLEDAIGDLLTGIAGLNVYTTNRTGLRLFPFVTISASVNSQMLGNYTGVYDMSVAVNYSDTAAKISQEDFDSEYCSIFEAFYSETPTLAFKIQNTIFDTKIHMARISSQSPSIRANKRAWQRGLTMSIICTPSEIADGIRYLNFSEVLNSMYVGVI
Ga0181359_10116499	F005584	GAG	MAGSIDTTYFLSDLSGMIKDLHSSVTGLGSNAVCASVTDLTTATDLDIGGEILRITQSLVVPASSISAPTIGMLCSVSGVERMVAGFSKSVDGVSFTLELADITT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1011649

Overview

Ecosystem & Geography

Associated Families

Sequences