Scaffold Ga0181359_1011380

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1011380
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3195
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F009883	Metagenome / Metatranscriptome	311	Y
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10113803	F058101	GGA	MTINPKDIHIATDGRIYSFSGFGGVMNCSDCDNDTMVNEYDRQDDGAVMWFCKPCEDRLH
Ga0181359_10113805	F000903	AGGAGG	MIAAIQHCHDKSADHSSRIVKDISWFAYVAQMGESMAAEMVVAKRLGYDYTPGITWDKSKADVGDHIEVKWSINPASNLWIQESDRHDRDIAVLVTGSSPNMKIMGWMPVVIAKKPRYRNPSQNNWSVPQINLQPIETLQRSNYAHSII
Ga0181359_10113806	F000403	GGA	MSDFMEIINPQTRIARLYYQGEVVEEYKVEQCDKCSKLTKFDAFGYQIGYDRTEKIIWFCGDCR
Ga0181359_10113807	F001897	AGGCGG	MAFMDNYEGNKERTDRWLATFPKGRLEAHIVEFNADKGYVLVQAKAWRDQTETEPAGIDYAYGYLAAYPDKMKRWMVEDTCTSALMRVMALVMGNTEKATKEVMASIKTETPAADYDYWTTKHGDVPSYQTAGEAEAAGTPSFGSSEDAWVPNAVPACSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGQWDPQV
Ga0181359_10113808	F009883	GGAG	MNEISIVIFMVIAGALWAVMAYAVGFKEGQRQGYTRGRAVSRHISQLDKAVK