Scaffold Ga0181359_1011115

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1011115
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3224
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007518	Metagenome	349	Y
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_101111510	F039000	AGGA	MGKLPYKPDKQIEEIMDNAQTLLNFCGNTFAKPSEAWYACLVSSAILTAELDVPVEVFLEGFEHAYKDAMRAKAKTGPSYDH
Ga0181359_10111154	F007518	GAG	MTDWTREEDEAFNDVEKHSNLGKQILKDIEGQPYHYDLYVSPMQRNLVLEEVAKEIQKMKAFNPDTIDSFAVYIRNMKT
Ga0181359_10111157	F045551	AGGAG	MTEQRELELLRPYVAACGEFVTKNAELEKHLKAIDRLLLEVLMGDIDPMQAMINRQKIKDEYEQT
Ga0181359_10111158	F028744	N/A	MHEFLYECDELGLDLKCFFEYEPAEVGSVEPMSGLKLEPDYPEVWTLVSVFLPNSNVDLSGVLHPDVIFRIEQDAPIYFEEMRREESYD
Ga0181359_10111159	F031377	AGGA	MITNAHEFTSVSGTNGRVTPFNTGKVQIGLLYQPKPPEMTSSEELVQAALMGWSSVHRPVPLWPVTLGSLIVGFLIILTVG