NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1011071

Scaffold Ga0181359_1011071


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1011071 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3228
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F004010Metagenome / Metatranscriptome457Y
F020665Metagenome / Metatranscriptome222Y
F021063Metagenome / Metatranscriptome220N
F022371Metagenome / Metatranscriptome214Y
F027439Metagenome194N
F037193Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_101107110F037193AGGMKSKDELAMQVKKEWDEQNLRWKLWVEAGGFTTEIFCYSSAEEEYSKCVRELVDHAYQMQSV
Ga0181359_10110712F021063GGAGVRSTQLCRGDYDDRVQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKDHTGAPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYVLPT
Ga0181359_10110713F022371AGGAMFCLLDLAGVVWVIGWFVLYSSLTLSAIYCALYIIFKLIDYIRKELDL
Ga0181359_10110714F020665AGGAMRKRKAGKYIDVVKTEECKSVKITVNVDDDLYETLAEAGRQHIIKDKKACFEYALNKALLEMIEELK
Ga0181359_10110717F027439AGGAGGMNEIYERVEIKVLDELLESNNCQPGKLIDERTTPLAWIMNQMLYDKFHGHGWVLDLLAGSFVKQKENKQCH
Ga0181359_10110718F004010AGGAGMPLGKNVSKNMSELARDNRKKGSERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS
Ga0181359_10110719F002826N/AMQVEAKARLKWARDMLAIAREKLVLERNRATHGHAIDMIQIITMVDAASLVCKEVVGEE
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