Scaffold Ga0181359_1010682

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1010682
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3270
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035312	Metagenome	172	Y
F036698	Metagenome	169	Y
F063706	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_101068210	F035312	N/A	MAFNEIAFTVITVLMSVIGYFLKALHGDLKNVEEEQKKIIETQGRLKGKIELVDNESRFKYEAIEKMTQLEIKHLAEQISELTQSVKKLIEVQLTR
Ga0181359_10106822	F036698	N/A	MKQYRVWLIDDVEEEGGFWWYCLLDDNGCLYDQSYPNEERDTIQWYIDNGYKVEEVL
Ga0181359_10106827	F063706	N/A	MAKKVGRPKKVDLIIETNKAEIEYHKDGTNHNLKYDGKKVDVHITKDDQGTKVEVQSENKFLKAIATLASKFIVKRFKKSK