Scaffold Ga0181359_1010447

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1010447
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3296
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015354	Metagenome / Metatranscriptome	255	Y
F023295	Metagenome / Metatranscriptome	210	Y
F035672	Metagenome / Metatranscriptome	171	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10104473	F048257	GGA	MTPFPSSVAARKCLQGEGCSETVYWVLRRTLLINTGLRLAGEKKDLWKKSFYGSLAVQAFVMAWTASHMDEEKASLPSGETALSGNAFEILGTYLTRSAIVGTGLWLGGERKNLIRNTLASTAMIQAAVLLWAKDQEV
Ga0181359_10104474	F063343	N/A	MNYLILLGIMSLFIFGQKTRTNWVSGIKSTLTKMMTPGADRRLFSGFTASPIGWIRNAVSWVRAFNWTGVAAGINGLGGVGGGTLITRKHVLFAQHVPYPERPFDIFFTNKDSRTFSYKVTAIQQVAGTDIAIGTLDRDADPSLNVYRVLPDNWLQYIANKTETLTTFGITFKETKTTLPILYVDSEKKVSTADLTEVRMNKATVTPPSFEAARAWTEALVVGDSGNPIFVMLGSELVLLGAWYTGTDAGVVGTFPWLIDYKAQIESITGTKLQIADLSGLDRIA
Ga0181359_10104475	F023295	GGA	VKHLHRLWLRAKLLLISKRSLVLLSIVQGLVGCSMTRVILVPEGQPVMLAEPVKAKVYAFDPNGKLVPSSNKVVLPAGWYALPRK
Ga0181359_10104476	F015354	GGA	MNPNLSSLIRHGLTAAGGFLVAKGLASADQVGELAGALVTIFGVVLSMLKNKKTTTPPAP
Ga0181359_10104477	F035672	N/A	MNFHDTLRDLGIGVGGPAGGLLVASIVPDPIMANLSVTLGSLAALTVIIKNVIDIWKNNQ