Scaffold Ga0181359_1010120

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1010120
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3339
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10101201	F003049	N/A	TPMTYLKTTTNPNTTKRGKQYMKNAKQIIGCCKAKKGEDTKGLGIITFGKSSIDKTKYVLVDITYDEKAGKELYEAGMLALRHDPEAVIEYAIKKALASMAKCKR
Ga0181359_10101203	F008741	N/A	MTAKTIKYSQRLGDVLRCLPACKHLADQGHEVFFDCLPQYHSVFDLVSYVKAGSKGDVLDLEIWPNKYETYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDEKPADELPESYNLVAPFGLSQGYYRNPLELITRARREIGAENFYVLCPPDIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDGWETDNIFSFEGMTTMD
Ga0181359_10101204	F005584	AGGAGG	MAGTIDTSYFSTDLQFMIADMFQTVTGLASSAVSASVTDLTTASELEIGGEVFRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0181359_10101206	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRFLDFSEQRNSMYVAGI