Scaffold Ga0181359_1010001

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1010001
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3352
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F017273	Metagenome / Metatranscriptome	241	Y
F039997	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10100013	F039997	GAG	MSDTRRIPLVMYPDGSLVRSEVVPEGCVLVTEPEEPQESDLPAVIDQTQAVKEAESGDIA
Ga0181359_10100014	F017273	GGAG	MMNKKPDMKKTGSKPMGYAKGGMTFKPCAACPNAAKCKAMGKCMAKAKK
Ga0181359_10100019	F000340	AGG	MNWADVLKAVIPIIVASLAWLLGQVNDFSTRLTRIEGAMPALITKEGVPTDSPISAERRAFMKENLMLHINELQVKVRLLEEREKMGVKK