NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1009866

Scaffold Ga0181359_1009866


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1009866 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3367
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009516Metagenome316Y
F093500Metagenome106N
F100671Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100986610F100671AGGMTKEIKYRMDPKTGRPLHLFGDLAAVLNDDGSTVTEHYDENGRLYRTSYKSVPYPKDWTP
Ga0181359_100986611F093500GGAMTEEEIDAFENYDLRAEATLAYRLMEHLAFKGLITDIEVSNLRYPPCELIVDAEAAWDE
Ga0181359_10098668F009516AGGMSRPMFYPMGTMAVGDSATMPAINKGDAKRTSRNVSQYGQRHDKHFICRTKDGLTTITRM

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