Scaffold Ga0181359_1009550

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1009550
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3405
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011484	Metagenome	290	Y
F040536	Metagenome	161	N
F055552	Metagenome	138	Y
F090097	Metagenome	108	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100955012	F055552	AGGAG	MNKEYWERKVDLCRKIGIEQLMAGDIKNGTRNLKRMVRAMEEVNLIKANEGEDKSAADMWADLIASGVMLTSEGESK
Ga0181359_100955014	F040536	AGGAG	MDELGKVIRFHPVKSPLSLFYEVIEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN
Ga0181359_100955016	F090097	GAGG	MTIRSKRVSGKQAIHYRNYRRARDRALTRLSQAYPETYKELLELEKVNDSTSGAKWIDIDGDHSLIVVTGTGSRREGTIIESAGYFAEGEGER
Ga0181359_10095502	F093483	N/A	MTIERVRHSGAIVVSALVEWEGVKWLESATYYGYTIKQAKASYIDSCKRLNYTIERG
Ga0181359_10095507	F011484	GGAG	MSELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLKLPQLMIEREGE