Scaffold Ga0181359_1009339

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1009339
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3430
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F061577	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10093393	F061577	N/A	MPRPKTEMTKSGKTIAVRATLSEWNEFKRLGGTKWLRQLLADSIERQKKT
Ga0181359_10093394	F042184	AGG	MEFDIDFCDLEIDIKTWVEWEYDPDYSPAEGLYNKFNWSAYLMVGNNRIDITDELSAKECKQIEKQIEESCDVGI
Ga0181359_10093395	F015970	AGGAG	MLASNKAIWESYQQLNDDDIMDAIQGSVAIPLAIKSDDWEYAQHFIKERIENKMTRRAELALYDTIKTPSIDADEELRMLRTLWLKDEYRGDKDET