Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1008332 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1008332 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3578
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3578

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F006743	Metagenome / Metatranscriptome	365	Y
F010680	Metagenome / Metatranscriptome	300	Y
F041644	Metagenome	159	Y
F051794	Metagenome	143	N
F078660	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100833211	F041644	AGGAG	MSLEFILERLTSVQVGGFWALMQVITYALVIWLGLVILSKINIKEREDKR
Ga0181359_10083322	F010680	AGGAGG	LAIVIQLSQAEVRVCALIAVERWLVKFGSEDRPNYAAGKRFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKARKNISDVGDLEVRTIRTQAAIPFWKKDVGRTIVGAKVLDDEYYSLVEIYGKFQADEYMIDQFADLSIDGWRVPVELLEV
Ga0181359_10083324	F006743	AGGAG	VRTENWQGNMRGLRLVGEGESGPVLSPYGPVRAGLTTSHRTQSQALSELLNCLEREVESLNSKYCEAYVTLMSVMEHLARLKDLLKSTDTTD
Ga0181359_10083325	F051794	GGAGG	MKATDKRKANAEKRAVWLRNYQRARGRAQTRLAQQYPDQYKELLEQERLSDEANGKAWLDITGITDNSDGVSTDTDGYDNAPRPKQTDGNTEGEGDLEGEG
Ga0181359_10083326	F078660	AGGAGG	MKPVNFYEVMDHKGEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDITAIVLATITSEREKA
Ga0181359_10083328	F002827	AGAAGG	MNKEYYQAKADLCRGLAIKQMVEGEAGEAGKNLLRMVNALNQINLINYKEEKDNA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1008332

Overview

Ecosystem & Geography

Associated Families

Sequences