Basic Information | |
---|---|
Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1008098 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3616 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (88.24%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001477 | Metagenome / Metatranscriptome | 687 | Y |
F003212 | Metagenome / Metatranscriptome | 500 | Y |
F003863 | Metagenome | 464 | Y |
F005558 | Metagenome | 396 | Y |
F007691 | Metagenome / Metatranscriptome | 346 | Y |
F018135 | Metagenome | 236 | Y |
F029678 | Metagenome | 187 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181359_100809810 | F005558 | GGAG | MNEDVVMSWSELAELTHATQVEKFDWCPCEDSDGVETTYPDCPAREEANE |
Ga0181359_100809812 | F029678 | GGAG | MNRVTGFTIFNKETGQKLATLPLTIPIGATVDAYERDGHSVGWGWEESDE |
Ga0181359_100809813 | F003212 | GAGG | MKDKWIVTLEIDTYDGPDPRYWDWSKLLTGDDVKVIESQFKGRVLPTSEGESNE |
Ga0181359_100809815 | F007691 | GGAG | METIEQLINEIYEDNYSHLEFLESMGGEACSCPIHTTLNTIVQYRDGKEGE |
Ga0181359_100809816 | F018135 | AGG | MTVERVQHSGALIVSQFVGEGAGEYLFTRTYYGYTLKQAKAQFKIALEGEGK |
Ga0181359_10080985 | F003863 | GGAGG | MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWVINPDSRLTISVHTRANAVPSVAGRTDYDSTDEGNYGGEA |
Ga0181359_10080987 | F001477 | GGAGG | MTNVYTIHPPKSELILFYEVVEPEGENTWGGVSCIEAIQWLFLAPKGSRLLISAWDSDEEDAHLVGQTIDVTDLIQQAREVGL |
⦗Top⦘ |