Scaffold Ga0181359_1008098

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1008098
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3616
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F005558	Metagenome	396	Y
F007691	Metagenome / Metatranscriptome	346	Y
F018135	Metagenome	236	Y
F029678	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100809810	F005558	GGAG	MNEDVVMSWSELAELTHATQVEKFDWCPCEDSDGVETTYPDCPAREEANE
Ga0181359_100809812	F029678	GGAG	MNRVTGFTIFNKETGQKLATLPLTIPIGATVDAYERDGHSVGWGWEESDE
Ga0181359_100809813	F003212	GAGG	MKDKWIVTLEIDTYDGPDPRYWDWSKLLTGDDVKVIESQFKGRVLPTSEGESNE
Ga0181359_100809815	F007691	GGAG	METIEQLINEIYEDNYSHLEFLESMGGEACSCPIHTTLNTIVQYRDGKEGE
Ga0181359_100809816	F018135	AGG	MTVERVQHSGALIVSQFVGEGAGEYLFTRTYYGYTLKQAKAQFKIALEGEGK
Ga0181359_10080985	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWVINPDSRLTISVHTRANAVPSVAGRTDYDSTDEGNYGGEA
Ga0181359_10080987	F001477	GGAGG	MTNVYTIHPPKSELILFYEVVEPEGENTWGGVSCIEAIQWLFLAPKGSRLLISAWDSDEEDAHLVGQTIDVTDLIQQAREVGL