NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1008098

Scaffold Ga0181359_1008098


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1008098 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3616
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F005558Metagenome396Y
F007691Metagenome / Metatranscriptome346Y
F018135Metagenome236Y
F029678Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100809810F005558GGAGMNEDVVMSWSELAELTHATQVEKFDWCPCEDSDGVETTYPDCPAREEANE
Ga0181359_100809812F029678GGAGMNRVTGFTIFNKETGQKLATLPLTIPIGATVDAYERDGHSVGWGWEESDE
Ga0181359_100809813F003212GAGGMKDKWIVTLEIDTYDGPDPRYWDWSKLLTGDDVKVIESQFKGRVLPTSEGESNE
Ga0181359_100809815F007691GGAGMETIEQLINEIYEDNYSHLEFLESMGGEACSCPIHTTLNTIVQYRDGKEGE
Ga0181359_100809816F018135AGGMTVERVQHSGALIVSQFVGEGAGEYLFTRTYYGYTLKQAKAQFKIALEGEGK
Ga0181359_10080985F003863GGAGGMESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWVINPDSRLTISVHTRANAVPSVAGRTDYDSTDEGNYGGEA
Ga0181359_10080987F001477GGAGGMTNVYTIHPPKSELILFYEVVEPEGENTWGGVSCIEAIQWLFLAPKGSRLLISAWDSDEEDAHLVGQTIDVTDLIQQAREVGL

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