Scaffold Ga0181359_1007661

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1007661
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3690
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F048101	Metagenome / Metatranscriptome	148	N
F048121	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F066486	Metagenome / Metatranscriptome	126	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100766110	F048121	N/A	MNTTQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVSVSAK
Ga0181359_100766114	F016774	N/A	MPPKKNKIIITQDHLDSLNHWRNEALKLEKSYYSKDSEKERTCRNMINKYLDDVLDYNKNIKEKPKNKV
Ga0181359_10076613	F066486	N/A	MKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMRDFFLGLGRRVITEDEFINIGFNYALIKGLGEAKKTKSKRK
Ga0181359_10076615	F048101	N/A	MKMKKFKNIKEFLKTCSHDEQEYIYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC
Ga0181359_10076618	F062446	N/A	MTSKTIRVIGFILYCLFWMAMAYLFVGCANVSYKTIPDGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY
Ga0181359_10076619	F082109	N/A	MWTPIEIFLLTFLLNYSPMKSERLSVKEVIQNREAQLLIESVSLRNDI