Scaffold Ga0181359_1007380

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1007380
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3737
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002868	Metagenome / Metatranscriptome	524	Y
F007102	Metagenome / Metatranscriptome	357	N
F018367	Metagenome / Metatranscriptome	235	Y
F048172	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100738010	F007102	GGAGG	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKVAKEAVKDPKKKYSSDTSQAMSTVMQLHELNKAEEELKWHFINQGHSQLWSQILLERNSIVQRRRTQEILDARAAKNRKQEIDEAITMGLCILVAAAIIMLVAWGVIEMKGKL
Ga0181359_100738011	F002868	AGG	VSEGTLNANSTLDKVLGYVDSPFKLAAILIMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLFKTTNATIVAVFKVNPMFGTRVLYRAYAKDGRDKTNDGLDVGLFTNNAANNADVVKLMANEIPCGEYRTAQSE
Ga0181359_10073808	F048172	N/A	VPAIEGEPQILARIDDDDKCRLTCTEQHPEYLAWLAEGNTPLPADE
Ga0181359_10073809	F018367	GGA	MIDAIASAQVPWPNTETKIVLVCRVVLPSEKYGANEFLDKDGRVCRWVLEVKNDRPN