Scaffold Ga0181359_1007302

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1007302
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3750
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10073021	F031483	N/A	MNILKGRVKYTAGKVFEGQYGASINAAITLENGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANELPEKVQTPTEGNNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFFY
Ga0181359_10073022	F014956	AGCAG	MNIHDFVINVTTTVCPSHIVEPIHLRKWWRQRGVGELEKYFVSGKAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGNEYSKRTS
Ga0181359_10073023	F041648	N/A	MNFLTGKIDTLPNTLTDNALTRYYELRIKYLEGEKERLSNEARADYLITLDFWIYAQRMIESYVIFHKESPHEYYYDVLKTILKNLESHNEKAFDTSINRLRLEVVTRCNEAIVKCEQITAAR
Ga0181359_10073024	F021732	N/A	MSITKFTVKCCLDKKLGHFVHVLFSRGFGLYGQTKPHSPDDNIEVHGWTFEPHDLDLQLYPNINRFNLMPLVDENELDWVIIKN
Ga0181359_10073025	F052398	N/A	MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVENLPKINQVVKNILPLYGIDASPEHLIEVTQFITTYKLIAVDEIKLAFEKFARQELKIDDHKLYGKVDLAAIGRILTAYITWRQKVYFTVDMEDEKKRGKMEEEQRQIEAKRKFYAEFPEMLSGFKGESYEDVPFYWYDAAMEAGLIGYAEGEKRAIWEEAQEIASKQKIQADSYIDFKTQLHRAAEESKKRAVIIAQKLAVWRIVLNRK