Scaffold Ga0181359_1007106

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1007106
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3786
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F021105	Metagenome	220	Y
F067738	Metagenome	125	N
F079819	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10071061	F021105	N/A	MNNPAEEYNRLHDHCQALARERDAAVRKIDELIKQLEEVKDELVLAHEALRREMP
Ga0181359_10071064	F000722	AGG	MVKQRFSTLEHPPCIISAVSESPYPDIGISQETRDAMYPENYSDKYNKVFKQFVDDIMKPARPIDRLDNHEILLDELTMMYDAHMTIGGEQNRFNASVLRAAINVIKSL
Ga0181359_10071066	F079819	GGAG	MPDAKTYHYEVFKCNLSTEQQVMVQIFRDPENGKVLHSQISFRNVIGDSWGVPYQLEKQ
Ga0181359_10071069	F067738	N/A	MQALWVALVAGGFTVLVAIINRADKTSRKDHAETYQALGRIEQKIDGHVVNHEKS