NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1006914

Scaffold Ga0181359_1006914


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1006914 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3825
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F004760Metagenome / Metatranscriptome424N
F012569Metagenome / Metatranscriptome279N
F047565Metagenome / Metatranscriptome149N
F068581Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10069141F004760N/ANGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSQFTPDSIKRAAIRRK
Ga0181359_10069143F012569N/AMSRALDKFQAQYGFSVGTTGTAPAGYWAIQMLADTTFSTISGKFDGTLTGVTIGSGNIIYGEFDSYTAGTGRVIGYIAG
Ga0181359_10069146F047565AGGMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSVAWDVLKNRFSN
Ga0181359_10069148F068581GGAGGMKLDLSVNEINTILACLGRAPYEAVFGLVEKISNQAKEQSEAK
Ga0181359_10069149F000635AGCAGMTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTSRTITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLSDDRTGDPDTYHFTGRNSSGVAQLDLYPRLATSGTIPLRVVEKLKCLTRTNYIVDFPPSNDALGDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGIKQIT
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