Scaffold Ga0181359_1006661

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1006661
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3874
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F014229	Metagenome / Metatranscriptome	264	Y
F091423	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10066612	F010817	GGA	VTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLVEDSGIKAYKDTFGNELFLIDSEHLVYFGVLNGWLKEKVSQDNIIDKTIDKINN
Ga0181359_10066613	F091423	GAG	MPTGILTAILSAVSGIFAAINNVFGAKNTKEMKDRQEAQKEVDHQSEIEHAVKDKDLEQARKHISS
Ga0181359_10066614	F014229	GGAG	MNKLNLIAVALLSVFLGACATTNTGKVDVATSVENTLPYVKPAVVLACTVVLDQATSGNDRIEKAKMINNVAAIVEALTVGTAPTPAQLQKALNDYLPSEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATASYVE
Ga0181359_10066615	F009669	N/A	MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDKAEAYITGIAKLVAVVSGIIFALTVKDAAVTGGTVAQTSEAKDRTNGENI