Scaffold Ga0181359_1006275

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1006275
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3952
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100627511	F023585	GGTGG	MSVKRLKLVEQFHSVVSKRLRDLFKDFDHAKRESYKDIISHLDYSHRITKELLERAKKYQKRDVEKAKK
Ga0181359_10062752	F005846	AGTAGG	VPANHDEFSDGFSIEGKLNGWRGWYDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWQKQRIRW
Ga0181359_10062753	F005702	GGA	VIIFLVVFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEPELMLPTKNWVGRN
Ga0181359_10062759	F023833	AGGA	MKSHSELIQDILNDVRSKAADLERERCADLVQQLADGTEDAVITGILNEVVVAIRRLADVGH