Scaffold Ga0181359_1005579

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1005579
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4116
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011208	Metagenome	293	N
F024501	Metagenome	205	Y
F065536	Metagenome	127	Y
F104726	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10055791	F011208	AGGAG	MTEDEIIRAYLSRLGKKGGSVKGSCKARKLSREHYAKVSKSQRERWDRFRRERQTEAQASKR
Ga0181359_100557910	F065536	AGAAG	MDETCAAPGAIEKAKNGREIFSDKIADEIVAACGSGFTLEKAGALVGVNANTIKTWASRKPDFARRVETARKKHELSLLRDIELAGAKSWQAKAWMAERIYHHAIPSARLQVSQDVTHGISGNLASLLAGIAGRKKITEAKKIEEVKNQDNYIDVKPLTDNAKNQMSHNKKLYQISQIADSQGDNNNVLPKPRHKQMRRRKPRAESLAKYPTTTTPPADPPTAI
Ga0181359_10055792	F024501	AGGAG	MTHPKQLDEVGITESYLRKMAKKEGVTYKKAVQIAMEQWGEYWLKLINKMVAEDIKTR
Ga0181359_10055795	F104726	AGGAG	LKTYLVEVFDKKDQYGGGMPCLQFEATCRQEAYETIFESLGININMKEESI