NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181359_1005413

Scaffold Ga0181359_1005413


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1005413 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4159
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004547Metagenome433Y
F030690Metagenome / Metatranscriptome184N
F071000Metagenome122Y
F081079Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10054132F030690N/AMGVGMVMFLRTIMQRSDVEVICNHMLGKVIVSCEALHGDSTIVIQLDDDSLIEISGEELSLYGELTPLDD
Ga0181359_10054135F071000N/AMIFLNILNFVGLSILKLIIVGLLFVVMGIALVFMAAMDYLTRALEYINSYVN
Ga0181359_10054137F081079AGGAMDIAEFLRQLTEQQNTQPNATSIGNENLNLNAYTRPTLGGNVNAYQETPVGLLSGTIGKEGTNPIYKDVALTNQNFRGGILSQADNVAPYGEYRDGNVMARVMGGNYPNASANYTTPLAGGQFTGGANYSNQGLGVNAEYAKQLNDFLFKAGINVTPKEQQFLLGFGGQF
Ga0181359_10054139F004547N/AMDTPLAKELVKEMSMATEAGEIVLTSEECTFKKQGLQGYDYAAYATDKGHPNHEGCWKSDNYEGKQAVYIYFPEINQTAVFDAKLFKPKATI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.