Scaffold Ga0181359_1004845

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1004845
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4314
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014976	Metagenome / Metatranscriptome	258	Y
F033039	Metagenome / Metatranscriptome	178	Y
F071251	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100484510	F071251	N/A	MNFRAENNEWHHGFQMDFANGCTISVQFSKGNYCDQGETTAEVAVFDKDNNWYILNEEDNHMSLVKIEEYSDVIGHCTTDLVASIIELTKKLK
Ga0181359_100484511	F033039	N/A	MSPYQKAAHEIIHDYYFMLPNNGSLNSGINSCESRYKEAVDCALLSVKQLILTLEFMSMEPNSAFVMDRINFYDEVTSELYGIKNGYSKLSWEELIEVFKK
Ga0181359_10048459	F014976	N/A	MKNFNKISKEKWIQLKRNADMYEVVGYQFGKNVTYDEVKVWNRDKWGNIRYSHVAVNQYW