Scaffold Ga0181359_1004643

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1004643
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4379
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F055720	Metagenome / Metatranscriptome	138	N
F056318	Metagenome	137	Y
F067425	Metagenome	125	Y
F097311	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100464310	F034068	AGGAG	MQIKTIKRQRNEPDFERLYQAYGGLIDWITKNEVDGQETLGLLVKAAIALAVTNNLPKEDILEVVSVTYEMERSMRPTSNEVH
Ga0181359_10046432	F055720	AGGAGG	MNTTLILNTNASNCTFTLDVDLRYASKNFPALSRIQRALNKFLKDKSHWLAEDDPRIVALVQSDAKLNVKYASGLSLTKIDPLYV
Ga0181359_10046433	F067425	AGGAG	MKLSVDLLDNEVKSAVIDIGANNGYVEVFVSKGVVHLNVFNKEGDVVHDYAITTKNLRAKGGWTTPKFEPTLD
Ga0181359_10046436	F097311	AGGAGG	MDDKERIVYLTSALKNLTLSADRYIDDGSWIEHLSLDVEFAKGVLKSTKYSKEERGIRDAVGRLITGEKA
Ga0181359_10046439	F056318	GGAG	MFKHITTYPWSVSRLTVWGYEGDYGIPMVADCYSKNTPVATMRANARLIAIAPQMYEIIQKMQSEDAKELVRYMEKEFENAD