Scaffold Ga0181359_1004544

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1004544
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4415
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F009801	Metagenome	312	Y
F022373	Metagenome	214	Y
F075854	Metagenome	118	Y
F076887	Metagenome	117	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100454411	F076887	AGGAG	MAKLSETTARTTIGMMRSMASHKPISPFHLMAADEMEKLLEEVLKYRKLEEKNT
Ga0181359_100454413	F003065	AGG	MNEPSLNIWEKALGWRKRQMIIKQLDPVSNQIRNNTLEEVAKEFDAMKNGGNTTASFAAYVRSMKK
Ga0181359_100454415	F075854	AGGAGG	MPRPKPPMDLKGRNMRMSDVEYLMFLELGGAEWLRKFVRKKAKLPINHYEKQVEDERMQKRVL
Ga0181359_100454416	F009801	AGG	MNECKKEYCDFIGNKAFEDDGGWSYEVWQAAQQAAFKRLSTRFAGYGDIDYTGHEIARYVNFLAKQDVPE
Ga0181359_10045447	F090062	GGAG	MLTTEQLRRKARQIYNNDMVPDHTNRHNQRKSVRAVLRLGDHWLTAKPIGRLNATESNT
Ga0181359_10045448	F022373	GGAG	MQPKVILEFTYPEDEDGLLFAIKGPEMYRALTNIKMAVTGSFNTKADLNAVLDRVQDLTDQIFEELGE