Scaffold Ga0181359_1004019

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1004019
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4610
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100401910	F035200	GAGG	MNLRYIVLRDGYRVSEDMHSDLKEAEAEAEFWRSVVRRWPDGTKVTIKKIGG
Ga0181359_100401911	F010746	N/A	MTYKCAISGEAISPERVEALQVLGVPESQWTKKEYSQTKKLRAVYAGDDGSNDIVICDAVDGGSMFDNAIIAEVEE
Ga0181359_100401913	F020860	AGTAG	MEITKAKKLKEGGYALYGVDPKTKTETQVGYIGEGLTLEAWLPKGVKIENS
Ga0181359_10040194	F022820	N/A	MKHENRINKILEKRVLKDEDPKIIAQIDKYLENLEVVFVKWAKAHPNWKETEE
Ga0181359_10040197	F007359	AGGA	MTLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMSSLSDKLGKKFIGAKGGLKAVAMNRVMNTINNIPSEHFVKTAEVQDFYSIGQVSAEKLDTDS