Scaffold Ga0181359_1003891

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003891
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4659
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019829	Metagenome	227	Y
F061848	Metagenome	131	N
F067738	Metagenome	125	N
F072334	Metagenome	121	N
F082693	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10038913	F067738	N/A	MQALWVALVAGGFTVLVAIINRADKTSQKDHAETYKALGRIEQKIDGHVTNHEKP
Ga0181359_10038916	F061848	N/A	MAVTISMAGLAYAYDAYNAPSALPVTPPVTVSLAPMATSTTTTAVPLTDCQYALQLAQQAGWPLTEMGTVARIIYRESGCKADAYNGKDTAGGSYGLYQINGYWCRPNKYWPIGWLQAQGILKTCTDLFDPVVNTNSAIAIWHNSGYGPWALPNP
Ga0181359_10038917	F019829	N/A	MTDYPIPDPGLTESTRQMYSDKYAETFKHFVDEVFRPSHVPAPKPVDHSILLDELDILREKYLAGTPSDEHKFAAAVITSAMAVIIGI
Ga0181359_10038918	F082693	N/A	MAQIDERVTICLNSQDRAEVNYLYRELETQTKHLQARDTFTHTYTLKASFTGLVAEYAFAKWFGYDYVIKPYDPLNDDVLGYQIKATERYDGCLIKQPHNPSGIYILGIVLNNYSKVSFRGWKDSSEIQRACYWRADVPKPGYFVPQAALWPLSDLPETIELQTHRTTGLW
Ga0181359_10038919	F072334	N/A	MTEKVETPNTQLQKVTLLVAMHDYEADQLDAGEWLLNVLYACAEQKTTGYYGAKHIAKVMQVLSVENCEVVVSNGL