Scaffold Ga0181359_1003870

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003870
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4672
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F004955	Metagenome	417	Y
F005562	Metagenome / Metatranscriptome	396	Y
F021772	Metagenome	217	Y
F024977	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100387011	F004955	AGAAG	MTFNPSKALIALVGLICMTVLIAVGAIDQDQGLPIITMIVGYSVGNGMAALTNKPVEPIIRKKDPQ
Ga0181359_100387012	F005562	AGGA	MTKPNIQIDDEVREMTDEEYAELLASGWTEEPTEP
Ga0181359_10038703	F024977	AGGA	MSEFMQPTNPMRIVTGNDEWTFTTPVFAIAIANDHHVEYLTINGNFYRPEQIKFAEMNINGQWIQLESHHHRQAKPELPSTD
Ga0181359_10038707	F021772	GGCGG	VNCNICACGFNSADIRMRVELRGICLKCAEEFGFKGMTVEETARCVSMIRVVNNLKNQTPAQARHLKDMES
Ga0181359_10038708	F001332	AGGA	MIDKIQEMTVAITKAEIAMKAAAWQIETLKADMGMLRKALFELAYVAEENGIYLSNLTKSTQDAIVAMRLGGFK