Scaffold Ga0181359_1003793

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003793
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4697
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F036236	Metagenome / Metatranscriptome	170	N
F066605	Metagenome	126	N
F080900	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10037932	F001396	GGTGG	VEPVWVPIVVAVIMGPVVVVLQRLRKENTDQHNEGRILLRVIGNKVDKVASKIDGHIGWHDGVKDSVEKED
Ga0181359_10037933	F066605	N/A	MEEFRCLDCLSTFMETELPKRGSICFKCHIRGIRWGFTYGKEDFHGPTVVERQREQMRQAESAGIKAEPVGQRWV
Ga0181359_10037936	F036236	AGGAG	MNKAKDIAGRIVALFLTNALGVVTGAAVIAPDLEVWKSALIAGAVSIFKVVEGLAKASIDGVLTKDEIDSAFGATPKKIAAKKAAAKVAK
Ga0181359_10037937	F080900	N/A	VKKILSEIHGLTWTLAGTGMVLITLSGSTRVFGVQITLVAIAIHLLGALLGEKNE