Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1003597 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1003597 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4783
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4783

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F078706	Metagenome	116	N
F083714	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10035971	F078706	N/A	ALGKKYEENRLSVLTRSFELGDHTFKVRVPSVQEIEAIYNYFKNPNEEKVELEYQRMLKEFDGLKEKEGVEIKDNDMVIDGRSMRETAKNKHILQHRIVEYIKFLIPETGSLEDINYEDVETEFPLSVQMTLVEKINEVISPEYKDIKSK
Ga0181359_10035972	F083714	N/A	MVFNGHTIQDIDALDEATMNEITVMYADGLVGNRSLLTMQGTLVAGVFNYLKASNSSPYTLKSVLGSAYEYIYGIEKADPSESLLTFMSQAPDFKMDRFKGK
Ga0181359_10035974	F000934	AGCAG	MATLNQILAISESVGINDHRFIGQMMSRNQRVATSEILTVQPFQFDMKPMNYLLYSQNRALLSNLREVDRQYESYLNFGSTGWWNYIAYQGDMSTAQIIACQYQTSSANKTIVLGSLPSISSTAYIVKTGDFLQINRYAYIATADVQRGAGSTVNIPVHRTIMTTLTSAMGAVIGQYGTTQSLGGLTYIGVTFPVILTEYPGYSFVPMTNDSFISWSGSFKAIEAVL
Ga0181359_10035975	F002085	AGAAG	MSNDIIPIQNTNNIRMADFVRVTTASGVYRFATTPSVLTIPAVDAQPFDALGALVKINDVQRDIKSTANETTITLVGLDTALLGWVLGHDIKGSLIEMWHGFFDDQNELITTGGSGGLYKFFTGYISSFSISEQYMEEARAYVGIITASASSIQIILQNRTAGRYTNNNAWQFFNPGDTSMNRVNFIETINYAFGKED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1003597

Overview

Ecosystem & Geography

Associated Families

Sequences