Scaffold Ga0181359_1003552

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003552
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4800
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007579	Metagenome	348	Y
F019829	Metagenome	227	Y
F063688	Metagenome	129	N
F067738	Metagenome	125	N
F072334	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100355210	F067738	N/A	MQALWVALVAGGFTVLVAIINRADKTSQKDHAETYQALGRIEQKIDGHVTNHEKS
Ga0181359_100355211	F007579	AGGTGG	MPTPTKQQIDTQIGNATRELAPGTTWKYNEPGDGYYCLEWMDDPALQPTEAATMLKATELATNPPTVA
Ga0181359_10035522	F063688	N/A	METMTRYNGNYGSHDQLQDLRKMNMALHHELDAIKRLLDEVTKELHQAQDELTLAIEALVRARGDKP
Ga0181359_10035524	F072334	N/A	MTEKVETPDTQLQKVTLLVAMHDYSPDDLNAGDWLLNVLMACAEQKNTAYYGAKEITKVMQILSVQDCEVVVSNGL
Ga0181359_10035526	F019829	N/A	MTDYPIPDPGLTESTRQMYSDKYAETFKSFVDEILKPVITPIAKPIDHSILLDEMSILREKYLAGTPSAEHKFAAAVIACAMAVIIGI