Scaffold Ga0181359_1003423

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003423
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4859
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F003659	Metagenome / Metatranscriptome	474	Y
F011474	Metagenome / Metatranscriptome	290	N
F030991	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100342312	F000710	N/A	MANGINMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPAVLVNALQLRVSLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0181359_10034235	F003659	N/A	MPQTASDAIGRYLIAREDVPVYDLPNGTRIGTINKGNSTAEVYSYVQRPGQVWFMFDYTIPGTTPGAYYVLAKDGRFSLSTAPGNVIVTPSSLPGVDVFPAGSQLKTFALYGIIGVLALLLLKK
Ga0181359_10034237	F030991	N/A	MVLKYLGCDKKYFRYELYDGDRMELYVETKLSARATAKLLFCNFGIKDIVLKIYNRTYGVKT
Ga0181359_10034239	F011474	N/A	MKEKIDHLTHFDIVVKEELASCTSADEMLHVLAKNYDLRKPLGGITKAAFTIGLRTAVGMLRPEVKANFNYKAKELKETRFPHLKIFR