Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1003374 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1003374 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	4879
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4879

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F035193	Metagenome	172	N
F042160	Metagenome	158	Y
F064395	Metagenome	128	Y
F093230	Metagenome	106	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10033743	F093230	AGGAG	MQGLNYKRLDGIANSISPYRGSLNRFPIGDRRHNTKYFLVEEEDKERVFNIVHGQRWTHVSLTKEEYEEHEKQGSPRLNKYQDGDGSWTYYKYEVSPNILGIVRPDNTFEFTGANYGQGDRGILSSYGHGWLSTESRRGGMIWTGKLNGTGERGALPIYHSMRVNCETMRPIKPITVVGRKVDRKVGKDLLAGYTDFYMTTEVMTKAMDYEVFVKTMLEVVNEHVPSGDFYLDHKEYTSVADKLIDTAPLDSAMLYIFAWDIGNMRWNLRRFSDTNFSRYSAHEDTPHTMFLNLKRRLNKEIYKAHEQVFKKVEYVNGEMYPPSEWGYTVMVDGVEVKQYD
Ga0181359_10033745	F042160	AGGAG	MMSRYYLDGFGSEDELNELLASDVLPLVRELQFKYNLKVMGKVMNVGYPQTDKDSYMMCYPNGLAVGKVWTTKVGGANSDQLEFCFRTPFYVKSRGSDQNDRETIRSTKLSSLMAVLKRQEVVRDKKLIMDSKVKQVKLGVSTLRRAMGTSDKQNSFTPDEIHVMLATLLGENTDGIIPVLDLNKCKNTLDIYKEADRIRDIKREESKRFFKNPFYLIGIDDYKHLLIGKFKMTTLHSDTSKIEYEIIEDFKRVRTVEEYPELVPLMTMMKVSYETKECRRLGVLNFPIMDGYDEGLDATFFYGSQPTNYEQAWMATPCPT
Ga0181359_10033746	F035193	GGA	MPHLIGELSPVVHPKKWELIRLPVRKVNNEYIVYVADGFHRIYTDDTLPDVLKSKFAMINANGEKFLPDSKILRLTLYTNTHAPELDEVGWRASETYYCLVVDRLTLESLKSGIQNDA
Ga0181359_10033748	F064395	GGA	MNEEDRSNLRDLHAGFALVGLLMKIKGIQLSRGGTAMSQLAESAYEIADAMQEARDQHSVGIVSIKRQINKEKANES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1003374

Overview

Ecosystem & Geography

Associated Families

Sequences