Scaffold Ga0181359_1003217

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003217
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4954
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F019448	Metagenome	229	Y
F033010	Metagenome / Metatranscriptome	178	Y
F038210	Metagenome / Metatranscriptome	166	N
F046910	Metagenome / Metatranscriptome	150	Y
F065707	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100321716	F015204	N/A	GETNAKFVWEECQKYTLMTIEDACKAQVAYDQGMKDGRASYEVHVAGWVLTPGMQPGMIWISDAGGEGGDFHIHELAEVIGKFYKEKF
Ga0181359_10032173	F019448	GAG	MNAMTKTQMVNACTDYEVEWFFTRDIEEQREVYRHIQLHGFKGFKEYTDEALFSSCVDSGVFLMEE
Ga0181359_10032174	F033010	N/A	MFVMVELKVVKRGRKVNLSPHQVAFHIKHADLRCPTYILVQHQPAGTTHASKSELLLFCGEQAIDLANLGVDTPALARWPWTGVSWSELRKHLVDS
Ga0181359_10032176	F038210	AGG	LTCFALVVALGVDLLHNVGMKIEKNIPLPGGVDPRERYPFPDMALGDSFMILDATWIKNLRSAAYMYSKRHPGTRFTCRRHGEGWRLWRVA
Ga0181359_10032178	F046910	AGGAG	VAGSGAQVTPSLQEIVEALGPRQLVQVVILTAGGQKYALIGPVMACAEVTDIEFGELMPMEVAAKMLSGDHKEWLGVGLQ
Ga0181359_10032179	F065707	N/A	MRPAIFSTENPPQPITCVETLEYIAGLRRRIEVQNDQMEQLVHQVFTLRARNERLNNEVEKLSLDLGIQQGDAGPGWQEVVPR