Scaffold Ga0181359_1003109

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003109
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5004
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F022401	Metagenome	214	Y
F025982	Metagenome / Metatranscriptome	199	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10031091	F043890	N/A	NMQKMSSWALSKPSSINKLRIECIDEEDGSMTIHIEWDETDPDLQWWTDLGPEGQETFIIDVLREALDCYVD
Ga0181359_10031092	F002738	N/A	MYSEKLWIVMSIDTYGLSSEQYEEFFEDNVKFAAKLYVKACQILKDNGAGAIDFKTTLDLYQEAIYGTSDDCRRYQKSNNPEAIKDNDIFGLSPSREEMMAEIQSVNAKVEALTDYLAELVKVTTNGLEGIAENLVD
Ga0181359_10031093	F001018	N/A	MTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCAHLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSTDPEFWHTTERKLYCVEETITTTKRVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVVQEYSVRSKRIFGEPRVEMVSSEYPGELLPEDSSAD
Ga0181359_10031094	F025982	N/A	MSCHDHAIKDFDLQLEMNGLQLDMLKENGEVIPYHLDEHSDLEEKKLKLLVGKRFHQNSSNAYWYYLQREKSAK
Ga0181359_10031096	F008128	N/A	MKTVPVPKLTVSFEVDIEVEYNSFGGKTADEIAEALQDEIHNLVFELDQVIGMESHCTSIAPYN
Ga0181359_10031098	F022401	N/A	MDTTKEPTDSVQSWQDWYRKHRLVAQTDKPLETKDLREKLKHSLSSNMDDTTNAVETLTDTDPKAMWIEKAREHFADTLAEYQYELNGKDFYKAFYQAAVEAMGYSEKEYQRTKELVDILRYRHLGQD