Scaffold Ga0181359_1003000

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1003000
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5065
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003962	Metagenome / Metatranscriptome	459	Y
F011208	Metagenome	293	N
F019450	Metagenome / Metatranscriptome	229	Y
F024501	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100300012	F019450	AGGAGG	MANIKHSYAVYNSVGQFFARFTSYARALRWAVRNGMEWSAIIRKERETQTK
Ga0181359_10030002	F003962	AGAAGG	LNQDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLHDACPSVWDTDEVDE
Ga0181359_10030004	F011208	AGGAG	MTEEEIIKAYLSRLGKKGGSVKGSCKARKLSREHYAKVSKAQRERWDKFRLGRQTEAQASKR
Ga0181359_10030006	F024501	GAGG	MTHPKQLDEVGITESYLRKMAKKEGVTYKKAVQIAMEQWGEYSLKLINKLVAEDIKERKRNR